A C D E F G H I L M N P R S T U V

A

append(byte) - Method in class edu.tufts.cs.geometry.Utilities.ByteSet

AUTO_SEED - Variable in class edu.tufts.cs.geometry.Generator

Chose the seed automatically, usually determined by the clock.

C

compareTo(Object) - Method in class edu.tufts.cs.geometry.PCA.PrincipalComponent

computeGraph() - Method in class edu.tufts.cs.geometry.PGBeta

computeGraph() - Method in class edu.tufts.cs.geometry.PGDelaunay

computeGraph() - Method in class edu.tufts.cs.geometry.PGGabriel

computeGraph() - Method in class edu.tufts.cs.geometry.ProximityGraph

Compute the graph from a initialized set of points.

ConvexHull - Class in edu.tufts.cs.geometry

ConvexHull() - Constructor for class edu.tufts.cs.geometry.ConvexHull

ConvexHullPeelingDepth - Class in edu.tufts.cs.geometry.datadepth

ConvexHullPeelingDepth() - Constructor for class edu.tufts.cs.geometry.datadepth.ConvexHullPeelingDepth

D

DepthEngine - Class in edu.tufts.cs.geometry.datadepth

DepthEngine() - Constructor for class edu.tufts.cs.geometry.datadepth.DepthEngine

DepthMeasure - Class in edu.tufts.cs.geometry.datadepth

DepthMeasure() - Constructor for class edu.tufts.cs.geometry.datadepth.DepthMeasure

depthMeasureFromName(String) - Static method in class edu.tufts.cs.geometry.datadepth.DepthEngine

distanceToLine(GVector, GVector, GVector) - Static method in class edu.tufts.cs.geometry.Geometry

doubleArrayFromGMatrix(GMatrix) - Static method in class edu.tufts.cs.geometry.Utilities

E

edu.tufts.cs.geometry - package edu.tufts.cs.geometry

edu.tufts.cs.geometry.datadepth - package edu.tufts.cs.geometry.datadepth

edu.tufts.cs.geometry.proxtools - package edu.tufts.cs.geometry.proxtools

F

fill(GMatrix) - Method in class edu.tufts.cs.geometry.Generator

fill(GMatrix, int) - Method in class edu.tufts.cs.geometry.Generator

fill(GMatrix, int, String) - Method in class edu.tufts.cs.geometry.Generator

fill(GMatrix, int, String) - Method in class edu.tufts.cs.geometry.UniformGenerator

fromCartesian(double, double) - Static method in class edu.tufts.cs.geometry.PCA.PolarVector2d

G

generate(int, int) - Method in class edu.tufts.cs.geometry.Generator

generate(int, int, int) - Method in class edu.tufts.cs.geometry.Generator

generate(int, int, int, String) - Method in class edu.tufts.cs.geometry.Generator

Generator - Class in edu.tufts.cs.geometry

A Generator object creates or fills a PointSet object with data.

Generator() - Constructor for class edu.tufts.cs.geometry.Generator

Geometry - Class in edu.tufts.cs.geometry

Geometry() - Constructor for class edu.tufts.cs.geometry.Geometry

getBetaValue() - Method in class edu.tufts.cs.geometry.PGBeta

getConnectedVertices(int) - Method in class edu.tufts.cs.geometry.ProximityGraph

getDepthValues(GMatrix) - Method in class edu.tufts.cs.geometry.datadepth.ConvexHullPeelingDepth

getDepthValues(GMatrix) - Method in class edu.tufts.cs.geometry.datadepth.DepthMeasure

getDepthValues(double[][]) - Method in class edu.tufts.cs.geometry.datadepth.DepthMeasure

getDepthValues(GMatrix) - Method in class edu.tufts.cs.geometry.datadepth.HalfspaceDepth

getDepthValues(GMatrix) - Method in class edu.tufts.cs.geometry.datadepth.L1Depth

getDepthValues(GMatrix) - Method in class edu.tufts.cs.geometry.datadepth.PCAL1Depth

getDepthValues(GMatrix) - Method in class edu.tufts.cs.geometry.datadepth.ProximityDepth

getEdgeCount() - Method in class edu.tufts.cs.geometry.ProximityGraph

Return the number of edges in the graph

getExtremePointsIndices(GMatrix) - Static method in class edu.tufts.cs.geometry.ConvexHull

getMeans(GMatrix) - Static method in class edu.tufts.cs.geometry.Geometry

getPrincipalComponents(GMatrix) - Static method in class edu.tufts.cs.geometry.PCA

getSeeds(GMatrix) - Method in class edu.tufts.cs.geometry.datadepth.ProximityDepth

getSeeds(GMatrix, double[]) - Method in class edu.tufts.cs.geometry.datadepth.ProximityDepth

getStdDevs(GMatrix) - Static method in class edu.tufts.cs.geometry.Geometry

Get the means and standard deviations for each dimension

getString() - Method in class edu.tufts.cs.geometry.Utilities.ByteSet

gmatrixFromMultiArray(double[][]) - Static method in class edu.tufts.cs.geometry.Utilities

H

HalfspaceDepth - Class in edu.tufts.cs.geometry.datadepth

HalfspaceDepth() - Constructor for class edu.tufts.cs.geometry.datadepth.HalfspaceDepth

I

isBetaEdge(int, int) - Method in class edu.tufts.cs.geometry.PGBeta

isRightTurn(Vector2d, Vector2d, Vector2d) - Static method in class edu.tufts.cs.geometry.Geometry

iterator() - Method in class edu.tufts.cs.geometry.ProximityGraph

L

L1Depth - Class in edu.tufts.cs.geometry.datadepth

L1Depth() - Constructor for class edu.tufts.cs.geometry.datadepth.L1Depth

length() - Method in class edu.tufts.cs.geometry.Utilities.ByteSet

M

mag - Variable in class edu.tufts.cs.geometry.PCA.PrincipalComponent

main(String[]) - Static method in class edu.tufts.cs.geometry.datadepth.DepthEngine

main(String[]) - Static method in class edu.tufts.cs.geometry.proxtools.ProxTools

N

NAME - Static variable in class edu.tufts.cs.geometry.proxtools.ProxTools

Normalize - Class in edu.tufts.cs.geometry

Normalize() - Constructor for class edu.tufts.cs.geometry.Normalize

NumericArrayParser - Class in edu.tufts.cs.geometry

A NumericArrayParser contains methods to read in a double valued array from a string or a file.

NumericArrayParser() - Constructor for class edu.tufts.cs.geometry.NumericArrayParser

P

parse(String) - Static method in class edu.tufts.cs.geometry.NumericArrayParser

Parses a string containing a numeric data set and returns a matrix representing that data set.

parse(File) - Static method in class edu.tufts.cs.geometry.NumericArrayParser

Parses a file containing a numeric data set and returns a matrix representing that data set.

PCA - Class in edu.tufts.cs.geometry

PCA() - Constructor for class edu.tufts.cs.geometry.PCA

PCA.PolarVector2d - Class in edu.tufts.cs.geometry

PCA.PolarVector2d(double, double) - Constructor for class edu.tufts.cs.geometry.PCA.PolarVector2d

PCA.PrincipalComponent - Class in edu.tufts.cs.geometry

PCAL1Depth - Class in edu.tufts.cs.geometry.datadepth

PCAL1Depth() - Constructor for class edu.tufts.cs.geometry.datadepth.PCAL1Depth

PCAProjection - Class in edu.tufts.cs.geometry

PCAProjection() - Constructor for class edu.tufts.cs.geometry.PCAProjection

PGBeta - Class in edu.tufts.cs.geometry

PGBeta() - Constructor for class edu.tufts.cs.geometry.PGBeta

PGDelaunay - Class in edu.tufts.cs.geometry

PGDelaunay() - Constructor for class edu.tufts.cs.geometry.PGDelaunay

PGGabriel - Class in edu.tufts.cs.geometry

PGGabriel() - Constructor for class edu.tufts.cs.geometry.PGGabriel

printUsage(String) - Static method in class edu.tufts.cs.geometry.datadepth.DepthEngine

printUsage(String) - Static method in class edu.tufts.cs.geometry.proxtools.ProxTools

project(int, GMatrix) - Method in class edu.tufts.cs.geometry.Projection

project(int, GMatrix, GMatrix) - Method in class edu.tufts.cs.geometry.Projection

projectDown(int, GMatrix) - Method in class edu.tufts.cs.geometry.PCAProjection

projectDown(int, GMatrix, GMatrix) - Method in class edu.tufts.cs.geometry.PCAProjection

projectDown(int, GMatrix) - Method in class edu.tufts.cs.geometry.Projection

Apply the projection with a specific target dimension to a given GMatrix containing the data to be modified.

projectDown(int, GMatrix, GMatrix) - Method in class edu.tufts.cs.geometry.Projection

projectDown(int, GMatrix) - Method in class edu.tufts.cs.geometry.TrivialProjection

Projection - Class in edu.tufts.cs.geometry

A Projection is a specific kind of Transformation that reduces the dimensionality of a PointSet.

Projection() - Constructor for class edu.tufts.cs.geometry.Projection

projectUp(int, GMatrix) - Static method in class edu.tufts.cs.geometry.Projection

ProximityDepth - Class in edu.tufts.cs.geometry.datadepth

ProximityDepth() - Constructor for class edu.tufts.cs.geometry.datadepth.ProximityDepth

ProximityGraph - Class in edu.tufts.cs.geometry

A ProximityGraph represents a real proxmity graph for a set of points.

ProximityGraph() - Constructor for class edu.tufts.cs.geometry.ProximityGraph

ProxTools - Class in edu.tufts.cs.geometry.proxtools

ProxTools() - Constructor for class edu.tufts.cs.geometry.proxtools.ProxTools

R

r - Variable in class edu.tufts.cs.geometry.PCA.PolarVector2d

readInput(InputStream) - Static method in class edu.tufts.cs.geometry.Utilities

S

ScaleTransform - Class in edu.tufts.cs.geometry

ScaleTransform(double[]) - Constructor for class edu.tufts.cs.geometry.ScaleTransform

setBetaValue(double) - Method in class edu.tufts.cs.geometry.PGBeta

setData(GMatrix) - Method in class edu.tufts.cs.geometry.ProximityGraph

setParameter(String, String) - Method in class edu.tufts.cs.geometry.datadepth.ConvexHullPeelingDepth

setParameter(String, String) - Method in class edu.tufts.cs.geometry.datadepth.DepthMeasure

setParameter(String, String) - Method in class edu.tufts.cs.geometry.datadepth.HalfspaceDepth

setParameter(String, String) - Method in class edu.tufts.cs.geometry.datadepth.L1Depth

setParameter(String, String) - Method in class edu.tufts.cs.geometry.datadepth.PCAL1Depth

setParameter(String, String) - Method in class edu.tufts.cs.geometry.datadepth.ProximityDepth

setTargetDimension(int) - Method in class edu.tufts.cs.geometry.Projection

Projection instances can remember a target dimension so they can be applied without parameters.

T

targetDimension - Variable in class edu.tufts.cs.geometry.Projection

theta - Variable in class edu.tufts.cs.geometry.PCA.PolarVector2d

toString() - Method in class edu.tufts.cs.geometry.PCA.PrincipalComponent

transform(GMatrix) - Method in class edu.tufts.cs.geometry.Normalize

transform(GMatrix) - Method in class edu.tufts.cs.geometry.Projection

transform(GMatrix) - Method in class edu.tufts.cs.geometry.ScaleTransform

transform(GMatrix) - Method in class edu.tufts.cs.geometry.Transformation

Apply the specific transformation to the data given

transform(GMatrix) - Method in class edu.tufts.cs.geometry.TranslateTransform

Transformation - Class in edu.tufts.cs.geometry

A Transformation defines a specific kind of modification to data.

Transformation() - Constructor for class edu.tufts.cs.geometry.Transformation

TranslateTransform - Class in edu.tufts.cs.geometry

TranslateTransform(double[]) - Constructor for class edu.tufts.cs.geometry.TranslateTransform

TrivialProjection - Class in edu.tufts.cs.geometry

TrivialProjection() - Constructor for class edu.tufts.cs.geometry.TrivialProjection

U

UniformGenerator - Class in edu.tufts.cs.geometry

UniformGenerator() - Constructor for class edu.tufts.cs.geometry.UniformGenerator

USAGE - Static variable in class edu.tufts.cs.geometry.datadepth.DepthEngine

USAGE - Static variable in class edu.tufts.cs.geometry.proxtools.ProxTools

Utilities - Class in edu.tufts.cs.geometry

Utilities() - Constructor for class edu.tufts.cs.geometry.Utilities

Utilities.ByteSet - Class in edu.tufts.cs.geometry

Utilities.ByteSet() - Constructor for class edu.tufts.cs.geometry.Utilities.ByteSet

V

vec - Variable in class edu.tufts.cs.geometry.PCA.PrincipalComponent

VERSION - Static variable in class edu.tufts.cs.geometry.proxtools.ProxTools

A C D E F G H I L M N P R S T U V